Brain Regeneration via Brain Tissue Transplantation
Dan Lewis Foundation | Winter 2024

In previous editions of this newsletter, we’ve discussed some of the research strategies being pursued to enable a severely injured brain to regrow healthy and functional brain tissue. Today, we will explore progress toward replacing lost or damaged brain tissue with new brain matter to support the recovery of lost capabilities.


At first, it seems implausible that new brain tissue can be created and successfully transplanted into someone who has survived a devastating brain injury. While it is now possible to replace a severely damaged liver with a portion of a healthy liver, and the transplanted fragment can grow into a complete, fully functional liver, it is hard to imagine that the same can be done with brain tissue.  Several barriers must be overcome if damaged brain tissue is ever to be replaced by new and functional brain tissue.


The first challenge is to identify a suitable source for replacement brain tissue. In recent years, it has become possible to transform cells found in our blood or snippets of skin into pluripotent stem cells. These induced pluripotent stem cells (iPSCs) can be reprogrammed into many different types of cells, including neurons. The reprogrammed iPSCs are called derived neurons. It is now possible, even common, to create vast numbers of these derived neurons, which can be grown in cell culture and attain the electrical properties of the neurons in an intact brain. 


If the derived neurons created from an individual are then transplanted back into that individual, these transplanted neurons will not be rejected as foreign since they contain the identity markers of the same individual.


Ten years ago, Lancaster and colleagues¹ demonstrated that it is possible to grow these derived neurons from a 2-dimensional sheet of neurons into an organoid, a small ‘mini-brain,’ a structure that is a few millimeters in diameter. These organoids develop to have many cell types and features found in a living whole brain. Organoids can only live in cell culture for a matter of months, though. They’re not connected to a circulatory system, so their growth is limited.


Nevertheless, the creation of self-organizing organoids demonstrates a crucial principle – derived neurons contain all the information necessary to create a complete brain.


Once organoids were successfully created, teams of researchers began efforts to transplant these organoids into living brains. The typical experimental system used for these experiments is a brain-injured rodent with a depleted immune system. Experiments focused on creating conditions so that a human organoid can be transplanted into such an animal. The goal was to see if organoids can connect to the host animal. Can these transplanted organoids grow new blood vessels? Can the neurons grow functional connections into the brains of the host?  Recently, there have been convincing demonstrations that human brain organoids can not only connect to the host animal,² but these transplanted tissues can become functionally active in conjunction with the host’s brain tissue. It has been unequivocally demonstrated that visual stimulation of the mouse causes activation of the transplanted human organoid tissue. Functional synapses (connections) between the human transplanted organoid tissue and the mouse brain are present.³ It appears that the transplanted organoids are ‘seeing’ the mouse’s visual inputs!


Transplanted organoids can even develop new long projections and compensate for infarcted brain tissue and cause functional recovery.⁴ Since it is now possible, in principle, to create new brain cells that can be grown into transplantable tissue that will functionally connect to the host brain, what other challenges will have to be addressed if this approach is to become practical for a brain-injured person? One challenge will be to create a suitable anatomical site for the transplantation of new tissue. Severe brain injuries result in a tangle of scar, debris, and partially active islands of residual brain tissue. The surgical techniques necessary to permit transplantation of brain tissue will have to be developed. But even if it becomes possible to implant new, viable tissue into a person’s brain and support its growth and proliferation, the next challenge will be to optimize the ability of the new tissue to form new connections without disrupting the synaptic activity of the host’s intact brain. There is a growing science and pharmacology of ‘synaptic plasticity.’ What drugs or stimulation patterns can cause neurons to respond to stimulation and create new functional connections?


Optimizing the plasticity of a transplanted organoid in the brain, while ensuring that the existing synaptic connections in the rest of the brain are not disrupted, is a complex challenge. The process will involve careful modulation of various factors to promote the integration of the organoid into the existing neural network without causing adverse effects. A number of strategies are being considered. Some are focused on applying specific growth factors and neurotrophins to the organoid. Others are focused on carefully targeted electrical stimulation, genetic engineering to modify organoids to activate or suppress plasticity genes, or local administration of drugs that modulate synaptic plasticity. This challenge en route to clinical use of organoid tissue is not yet solved. In general terms, we know that newly transplanted tissue must be ‘programmed’ to become functionally useful and integrated into pre-existing brain tissue. One of the fundamental ideas of brain science is that ‘neurons which fire together, wire together…’. New connections between neurons are created and reinforced by experience. If new brain tissue is introduced into an adult brain, the challenge will be to create conditions that optimize the capability of the new tissue to become programmed by external stimulation while not disrupting the stable connections of the pre-existing brain. We’ll likely learn, over the years to come, about techniques to enhance the programmability of the new tissue without causing loss of function in preexisting tissue. One aspect of programming new brain tissue will involve the interfacing of computational devices and algorithms to translate external ‘real-world’ signals into neuronal stimulation patterns and to train new neuronal tissue to control motor behaviors. “Closed loop” devices will, inevitably, accelerate the training of newly implanted brain tissue. The progress in organoid biology allows us to envision a (hopefully) not-too-distant future where new neuronal tissue grown from a person’s own induced stem cells can be transplanted into a damaged brain. This transplantable tissue, grown from iPSC-derived organoids, will contain the information to ‘self-organize’ and will not proliferate uncontrollably. This tissue will be (in this future scenario) introduced into a surgically optimized environment. It will mature, differentiate, grow new blood vessels, and create connections to preexisting functional brain tissue. A pharmacologic formula to optimize new synaptic programming will be developed.  At that point, the transplanted DLF organoid tissue will need to be programmed by experience and by biomechanical prostheses to restore lost functions.


An entirely new field of bioengineering is just now emerging. It is called “organoid intelligence“5 we’ll devote a future column to this topic, but, in essence, this is the study of techniques used to train and program organoids to analyze signals and direct outputs. Biomechanical methods to program organoids will inevitably be applied to help newly engrafted tissue become functionally useful. To recap… It is now possible to envision a realistic path to a future in which severe brain injuries will be treated by the transplantation of healthy neurons derived from a person’s own tissues and stimulated to grow, differentiate, connect, and learn. The learning will be achieved by putting the new tissue into a maximally adaptive (‘plastic’) state and stimulating it with biomechanical systems. There is, of course, a long way to go until these concepts are perfected and clinical trials are possible. Very substantial financial, technical, and intellectual resources will be required. It is encouraging that the quest to heal a damaged brain is becoming a bioengineering challenge, not a basic science challenge, and engineering challenges can be addressed by focus and resources.


It is the goal of the DLF to raise awareness of the paths toward healing the severely damaged brain, identify strategies to advance the required technologies and focus the resources required to do the work necessary to bring life-transforming therapies to patients.



References


  1. Lancaster, M. A. et al. Cerebral organoids model human brain development and microcephaly. Nature 501, 373–379 (2013).
  2. Mansour, A. A. et al. An in vivo model of functional and vascularized human brain organoids. Nat. Biotechnol. 36, 432–441 (2018).
  3. Wilson, M. N. et al. Multimodal monitoring of human cortical organoids implanted in mice reveal functional connection with visual cortex. Nat. Commun. 13, 7945 (2022).
  4. Cao, S.-Y. et al. Cerebral organoids transplantation repairs infarcted cortex and restores impaired function after stroke. NPJ Regen Med 8, 27 (2023).
  5. Smirnova, L. et al. Organoid intelligence (OI): the new frontier in biocomputing and intelligence-in-a-dish. Front. Sci. Ser.1, (2023).
A gold trophy with a laurel wreath around it.
By Dan Lewis Foundation April 2, 2025
For the third consecutive year, the Dan Lewis Foundation for Brain Regeneration is proud to announce the DLF Prize competition. The 2025 DLF Prize, a $20,000 award, will recognize an outstanding early career scientist (2 to 5 years post-doc) conducting innovative research in neuroscience, pharmacology, or biotechnology. This prestigious prize honors researchers whose work aligns with the DLF mission to drive breakthroughs in neural regeneration and repair. The current research priorities of the DLF are: Pharmacological Reactivation of Neural Repair: Research into pharmacological methods of reactivating or augmenting synaptogenesis, neurogenesis or axonal repair. Cell-Based Cortical Repair: Investigating the potential of derived cortical neurons to restore function in damaged cortical regions. Transcriptomics of Neural Recovery: Characterizing transcriptomic profiles of cortical neurons in the recovery phase following brain injury to identify pathways that drive repair. Molecular Inhibitor Targeting: Advancing anti-sense oligonucleotides (ASO’s) or small-molecule therapeutics designed to downregulate inhibitors of neural regeneration in the cortex or spinal cord. Application for the 2025 DLF Prize can be made by going to our website— danlewisfoundation.org —and clicking on the Tab “ 2025 DLF Prize ”. This will bring you into the application portal. The application portal opened in March, 2025 and will remain open through May 31st. Once in the portal, you will find complete information about the DLF prize, eligibility requirements, and an application form which can be filled in and submitted online. The winner of the 2023 DLF Prize, Dr. Roy Maimon, continues his research indicating that downregulation of PTBP1, an RNA-binding protein, can convert glial cells into neurons in the adult brain (Maimon et al. 2024) .* Dr. Maimon, currently a post-doc at the University of California, San Diego is currently interviewing for a faculty position at several prominent neuroscience departments. The winner of the 2024 DLF Prize, Dr. William Zeiger is a physician-scientist in the Department of Neurology, Movement Disorders Division, at UCLA. Dr. Zeiger has expertise in interrogating neural circuits using a classic “lesional neurology” approach. He states, “Our lab remains focused on understanding how neural circuits become dysfunctional after lesions to the cortex and on investigating novel circuit-based approaches to reactivate and restore damaged cortex”. * Maimon, Roy, Carlos Chillon-Marinas, Sonia Vazquez-Sanchez, Colin Kern, Kresna Jenie, Kseniya Malukhina, Stephen Moore, et al. 2024. “Re-Activation of Neurogenic Niches in Aging Brain.” BioRxiv. https://doi.org/10.1101/2024.01.27.575940.
By Dan Lewis Foundation April 2, 2025
Alan was injured in 2021, at age 42. An art teacher in Lakewood, Colorado, Alan was riding his bicycle after school and was crossing at an intersection when a truck turned into the crosswalk area and hit him. Alan reports no memory of the event but has been told this is what happened. Alan says “My frontal lobe took the brunt of the impact, particularly the left frontal lobe”. Alan had a 2 ½ week stay at a nearby hospital where he, “re-learned to talk, to walk, and drink”-- although again he reports no memory of his stay there. Alan was then transferred to Craig Rehabilitation Hospital, in Englewood, Colorado. Alan says, “The only reason I knew I was at Craig is that I rolled over in bed and saw “Welcome to Craig” on the dry erase board.” During this stage of recovering, Alan repeatedly denied that he had been in an accident. Twice he tried to leave Craig on his own accord despite his wife’s and his therapists’ assurances that it was important for him to stay to recuperate from his injuries. Alan’s wife was 8 months pregnant at the time of his accident and gave birth to their son while Alan was an inpatient at Craig. Alan’s wife brought his newborn son to visit him days after the birth and Alan held him while sitting in his wheelchair, but Alan wistfully reports this is another thing he can’t remember. Alan reports that he still has significant difficulties with memory. Alan has also experienced several other neuropsychological difficulties. He states that for months after his injury, he could not experience emotion. “I could not laugh, I couldn’t cry.” Even after three years, his emotional experience is constricted. However, an emotion that is sometimes elevated is irritation and anger. Sometimes, dealing with people can be difficult because he may have temper flare-ups with little reason. This is something that Alan regrets and he is working hard with his neuropsychologist to improve the regulation of his emotions. Alan also has difficulty with organization, motivation, and distractibility. Earlier in his recovery, he had trouble sequencing and had difficulty carrying out personal and household routines. Alan has benefited greatly from therapy and his own hard work to make improvements in these areas. A chief reason that Alan works so hard in his recovery is so that he can be a good father to his son who is now almost 3 years old. He recognizes that it is important not to get frustrated when it seems that he can’t provide what his son wants or needs at a given moment. “I’m trying to raise my son the best I can…he’s at such a pivotal time in his life.” Alan’s financial situation was helped for a time by Social Security Disability Insurance payments but these payments ended. He is trying to get SSDI reinstated but the process of doing so is confusing and is taking a lot of time. Alan returned to work about 11 months ago at a liquor store (after about 2 years of not being able to work), the same store where he previously worked part time while teaching. He works in the wine department. “I sell wine and make recommendations.” When asked for advice to other brain injury survivors, Alan’s words were: “No matter how confused or upset you are or how frustrated you get, keep pressing on and moving forward because there is light at the end of the tunnel even though it may seem long. Keep moving forward and don’t give up no matter what anyone says to you”. Alan added that supports for individuals with brain injury are very important. He has found support groups, retreats, and seminars/events where brain injury survivors can share their experience to be very helpful. The volunteer work he does at Craig Hospital has been valuable for him. Alan is an inspiring individual. Despite having scarce memory of his accident and some confusion about the functional losses he has experienced, Alan has worked hard to make his recovery as complete as possible. He continues to work hard to progress and to express gratitude for those who have assisted him along the way.
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